The genes included here showed significant differences in gene expression (FDR fold change in at least one experiment. Genes shown in red had upregulated expression, and those shown in yellow had downregulated expression in infected ducks relative to controls or in DK/49 infected relative to GS/65 infected ducks. (Full gene names are given in Supplementary Table 13.) Hierarchical clusters of genes and samples were based on Pearson correlation and Spearman rank correlation analyses, respectively. (a) Overall gene expression profiles in DK/49 or GS/65 infected ducks compared to control animals. The heatmap was generated from hierarchical cluster analyses of both genes and samples. (b) Expression of 119 innate immune genes in DK/49 or GS/65 infected ducks.
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